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14th ICPA - Session

Session
Title: Big Data, Data Mining and Deep Learning 1
Date: Tue Jun 26, 2018
Time: 10:00 AM - 11:45 AM
Moderator: N/A
Digital Transformation of Canadian Agri-Food

Agriculture in Canada is on the cusp of a dramatic revolution as a result of the digital transformation of the industry driven by the emergence of tools such as Precision Agri-Food Technologies and the Internet of Things (IoT, a network of interconnected physical devices capable of connecting to the internet). With the expected exponential growth of data from the application of innovative technologies such as IoT by the Canadian Agri-Food industry, Canada has the potential to gain valuable insights through leveraging this data using powerful tools such as data analytics. These tools can provide producers and industry stakeholders with intelligent decision support tools that will enable actionable outcomes, moving beyond current system monitoring and alerts. Ultimately, it is through data, analytics and emerging technologies that Canadian Agri-Food will be able to address current and future challenges; to identify best management practices to reduce nutrient use or antimicrobials in livestock farming or the challenges of food security and safety. Data, analytics and technology will provide insights into overall trends, insights into the overall landscape of the Canadian Agri-Food industry, allowing for governments to implement smart policies based on authentic and real-time data and support/showcase sustainable Canadian farming practices to consumers; provincially, nationally and globally. 

Karen Hand (speaker)
Ms. Darcilene Figueiredo
Federal Univ. of the Jequitinhonha and Mucuri Valleys Brazil
Diamantina , AL, Minas Gerais 39100000
BR
Graduate at Animal Science from Federal University of Viçosa (2003), master's (2005) and doctor`s (2008) in the Ruminants Production area by the Federal University of Viçosa. In February 2010 he completed post-doctoral studies in the area of Production and Nutrition of Ruminants by the State University Paulista (FCAV-UNESP), with a scholarship from FAPESP. She is currently professor of the Animal Science Department at the Federal University of the Jequitinhonha and Mucuri Valleys - UFVJM - Campus JK Diamantina city – MG state. She is responsible for the disciplines Ruminants Nutrition, Sheep and Goats production and Introduction to Animal Science. She is a permanent lecturer in the Graduate Program in Animal Science at UFVJM, and is responsible for the disciplines Ruminants Nutrition and Nutritional Methods and Evaluation of Food for Ruminants. She has experience in the area of Animal Science, with emphasis on Production, Nutrition and Animal Feed, working mainly in the following subjects: supplementation, nutrition and cattle production, beef cattle, pasture and grazing, sheep food evaluation.
Length (approx): 15 min
 
Changing the Cost of Farming: New Tools for Precision Farming

Accurate prescription maps are essential for effective variable rate fertilizer application.  Grid soil sampling has most frequently been used to develop these prescription maps.  Past research has indicated several technical and economic limitations associated with this approach.  There is a need to keep the number of samples to a minimum while still allowing a reasonable level of map quality.  As can be seen, precision agriculture management requires understanding soil at increasingly finer scales. Conventional soil sampling and laboratory analyses lack this granularity and are time consuming and expensive. Remote soil sensing overcomes these shortcomings. Through its collection of spatial data with quicker, cheaper, and less laborious techniques, remote soil sensing has the opportunity to enhance precision farming today. The objectives of this article are to review the challenges facing conventional soil sampling and evaluate new remote soil sensing tools to enable farmers to better utilize effective solutions to high fertilizer costs and low commodity prices.  Soil samples were collected on site in a grid spaced throughout a field in west central Illinois at the appropriate timing and in the agricultural cycle such that representative levels of Nitrogen (N), Potassium (K) and Phosphorous (P) were present.  The samples were stored in sealed paper bags, then sent to Waters Agricultural Laboratories to have the levels of N, P, and K measured.  The samples were then sent to SpecTIR to be assessed in their lab environment using spectrometry techniques. The fundamental conclusion is that it is possible to measure N, P, and K (and probably other desired nutrients/elements) by using a spectrometry genre technology.  This was the desired objective of the first milestone and the lab acquisition and subsequent analysis demonstrates the ability to detect the presence and quantify the concentration of N, P, and K in soil.

Penelope Nagel (speaker)
COO
Persistence Data Mining, Inc
Mount Auburn, IL 62547
US
Penelope Nagel is a 9th generation farmer and co-founder of Persistence Data Mining, Soilytics, soil health monitoring technology. She holds a BA from SDSU and an MBA from University of Phoenix. Her professional experience includes positions at HSBC, Anheuser Busch, Midland Credit and Wells Fargo. Blending a love for agriculture with a passion for the sea has empowered her with experience, knowledge and resources to be part of a team that is creating revolutionary changes that will benefit people and the planet. Persistence Data Mining's SoilyticsTM technology has been supported by the UN development program for helping to meet 5 sustainable development goals while helping our customers to maximize profits. We have created an ecosystem of experts from across many industries to create a sustainable solution to benefit the planet as we continue to meet the food requirements of a growing population. We have taken risks in involving those who might  appear to lose from such technology and have been met with open arms in a community of problem solvers that understand the benefits of nutrient mapping on a more granular level to truly become sustainable in our agricultural practices. Penny lives in California and spends time in the field during Spring and Fall to support her family farm. ncluding both of my kids in learning to be good stewards of the land is a family tradition. I  hope my work will empower other families to carry on this tradition.
Kim Fleming
Consultant
Fort Collins, CO 80525
US
Length (approx): 15 min
 
Multi-Temporal Yield Pattern Analysis - Adaption of Pattern Recognition to Agronomic Data

In precision agriculture, the understanding of yield variability, both spatial and temporal, can deliver essential information for the decision making of site-specific crop management. Since commercial yield mapping started in the early 1990s, most research studies have focused on spatial variance or short-term temporal variance analyzed statistically in order to produce trend maps. Nowadays, longer records of high-quality yield data are available offering a new potential to evaluate yield variability over time by using alternative (to the traditionally statistical approach) analysis methods, for example pattern recognition. The research idea of Multi-temporal Yield Pattern Analysis (MYPA) was inspired by the digital soil mapping method Multitemporal Soil Pattern Analysis (MSPA). In order to produce soil property maps, the MSPA method extracts stable soil reflectance pattern from satellite time series using pattern recognition combined with statistical pattern stability analysis. The MYPA approach is the adaption of image analysis techniques of the remote sensing discipline (here: pattern recognition) to agronomic data (here: yield data). The current state of the MYPA method will be presented that makes it possible to i) select outlier yield maps from yield map time series, ii) detect spatially homogenous yield pattern, and iii) evaluate their spatiotemporal variability. This method enables the generation of site-specific crop management zones considering both the productivity and stability of yield over space and time. The MYPA method consists basically of following steps: (1) identification and elimination of outlier yield maps, (2) yield pattern detection using principal component analysis; (3) evaluation of spatiotemporal yield pattern stability using statistical per-pixel analysis; and (4) management zones delineation based on k means clustering. Results from one demonstration field are presented and contrasted (with favourable outcomes) with the more traditional statistical mean approach to multi-temporal yield pattern delineation.    

Gerald Blasch (speaker)
Dr
Newcastle University
, AL
GB
James Taylor
Dr
Newcastle University
, AL
GB
Senior Lecturer in Precision Farming Head of Crop and Soil Science Research Group.
Length (approx): 15 min
 
Forecasting Crop Yield Using Multi-Layered, Whole-Farm Data Sets and Machine Learning

The ultimate goal of Precision Agriculture is to improve decision making in the business of farming. Many broadacre farmers now have a number of years of crop yield data for their fields which are often augmented with additional spatial data, such as apparent soil electrical conductivity (ECa), soil gamma radiometrics, terrain attributes and soil sample information. In addition there are now freely available public datasets, such as rainfall, digital soil maps and archives of satellite remote sensing which can be used to interpret the crop-growing environment. However, rather than analysing one field at a time as is typical in precision agriculture research, there is an opportunity to explore the value of combining all this data for multiple fields/farms and years into one dataset. Using these datasets in conjunction with machine learning approaches offers the possibility of building predictive models of crop yield. In this study, several large farms in Western Australia were used as a case study, and yield monitor data from wheat, barley and canola crops from three sequential that covered approximately 11,000 to 17,000 hectares in each year were used. The yield data was processed to a 10 m grid, and a space-time cube of predictor variables was built at this scalle. This consisted of grower-collected data such as ECa and gamma radiometrics surveys, and the freely-available public data. The data was aggregated to a 100 m spatial resolution for modelling yield. Random Forest models were used to predict crop yield of wheat, barley and canola using this dataset. Three separate models were created based on pre-sowing, mid-season and late-season conditions to explore the changes in the predictive ability of the model as more within-season information became available. These time points also coincide with points in the season when a management decision is made, such as the application of fertiliser. The models were evaluated with cross-validation using both fields and years for data splitting, and this was assessed at the field spatial resolution. Cross-validated results showed the models predicted yield accurately, with a root mean square error (RMSE) of 0.36 to 0.42 t ha-1, and a Lin’s concordance correlation coefficient (LCCC) of 0.89 to 0.92 at the field resolution. The models performed better as the season progressed, largely because more information about within-season data became available (e.g. rainfall, remote sensing). The yield forecasts were used to formulate basic nitrogen application scenarios. The more years of yield data that were available for a field, the better the predictions were, and future work should use a longer time-series of yield data. The generic nature of this method makes it possible to apply to other agricultural systems where yield monitor data is available.

Patrick Filippi (speaker)
Dr
The University of Sydney
AU
Mario Fajardo
The University of Sydney
Sydney, AL, NSW 2042
AU
Brett Whelan
Associate Professor
Precision Agriculture Laboratory
Sydney, AL, NSW 2015
AU
Length (approx): 15 min
 
Data Clustering Tools for Understanding Spatial Heterogeneity in Crop Production by Integrating Proximal Soil Sensing and Remote Sensing Data

Remote sensing (RS) and proximal soil sensing (PSS) technologies offer an advanced array of methods for obtaining soil property information and determining soil variability for precision agriculture. A large amount of data collected using these sensors may provide essential information for precision or site-specific management in a production field. In this paper, we introduced a new clustering technique was introduced and compared with existing clustering tools for determining relatively homogeneous parts of agricultural fields. A DUALEM-21S sensor was used, along with high-accuracy topography data, to characterize soil variability from three agricultural fields in Ontario, Canada. Sentinel-2 data were used for measuring bare soil and historical vegetation indices (VIs). The custom Neighborhood Search Analyst (NSA) data clustering tool was implemented using Python. In this NSA algorithm, part of the variance of each data layer is accounted for by subdividing the field into smaller relatively homogeneous areas. The algorithm was illustrated using field elevation, shallow and deep ECa, soil pH, and several VIs. 

Md Saifuzzaman (speaker)
Postdoctoral Researcher
McGill University
Sainte-Anne-de-Bellevue , AL, QC H9X 3V9
CA

Md Saifuzzaman is a Postdoctoral Researcher in the McGill Precision Agriculture and Sensor Systems (PASS) Research Team at McGill University (Macdonald Campus). He holds a Ph.D. degree from the Department of Bioresource Engineering, McGill University, where he investigated machine learning models and AI tools for crop production by integrating proximal soil sensing and remote sensing data. Prior to his work in the Department, he completed two master’s programs – an M.Sc. from Jahangirnagar University, Bangladesh, and MES from Queen’s University, Canada. He has over eight professional affiliations, and chaired different executive committees and numerous workshops, guest-edited special issues, and reviewed submissions to a wide range of scholarly journals. Much of this research has involved collaborating with local and international researchers in environmental science, soil science, computer science, and broader geosciences. See more details on his personal webpage: https://sites.google.com/site/saifuzzamanju or Linkedin: https://www.linkedin.com/in/saifuzzaman-md

Viacheslav Adamchuk
Professor and Chair
McGill University
Ste-Anne-de-Bellevue, AL, Quebec H9X 3V9
CA

Originally from Kyiv, Ukraine, Dr. Adamchuk obtained a mechanical engineering degree from the National Agricultural University of Ukraine (currently National University of Life and Environmental Sciences of Ukraine), located in his hometown. Later, he received both MS and PhD degrees in Agricultural and Biological Engineering from Purdue University (USA). In 2000, Dr. Adamchuk began his academic career as a faculty member in the Department of Biological Systems Engineering at the University of Nebraska-Lincoln (USA). Ten years later, he assumed his current position in the Department of Bioresource Engineering at McGill University (Canada), while retaining his adjunct status at the University of Nebraska-Lincoln. Currently, he serves as the Chair of the Bioresource Engineering Department. In addition, he is Canada’s representative to the International Society of Precision Agriculture. Dr. Adamchuk leads a Precision Agriculture and Sensor Systems (PASS) research team that focuses on developing and deploying soil and plant sensing technologies to enhance the economic and environmental benefits of precision agriculture. His team has designed and evaluated a fleet of proximal sensor systems capable of measuring physical, chemical and biological attributes directly in a field. Most sensors produce geo-referenced data to quantify spatial soil/plant heterogeneity, which may be used to prescribe differentiated treatments according to local needs. Through studies on sensor fusion and data clustering, he investigated the challenges faced by early adopters of precision agriculture. Through his outreach activities, Dr. Adamchuk has taught multiple programs dedicated to a systems approach in adopting smart farming technologies around the world.

Hsin-Hui Huang
Postdoctoral Researcher
McGill University
Sainte-Anne-de-Bellevue, AL, Quebec H9X2A1
CA
Nicole Rabe
Assistant professor
Zagreb, CA 10000
HR
Asim Biswas
Professor, OAC Research Chair in Soils and Precision Agricul
University of Guelph
Guelph, AL, ON N1G 2W1
CA

Dr. Asim Biswas is the OAC Research Chair in Soils and Precision Agriculture, a Professor, and the Graduate Program Coordinator at the School of Environmental Sciences, University of Guelph, Canada, and a member of the Royal Society of Canada College of New Scholars. He is also a visiting Professor at three other universities. He is a past President of the Canadian Society of Soil Science and chair or vice-chair of several other divisions and communities at different international professional societies including the Soil Science Society of America, American Society of Agronomy, and International Union of Soil Science. He is the Country Lead for Canada for ISPA as well. His research program on sustainable soil management is focused on increasing the productivity and resilience of our land-based agri-food production systems in an environmentally sustainable way while accounting for changing climate, economy, technology, and production methodologies. Integrating soil data, sensors, and technology with fundamental knowledge of soil and crop production practices, his pioneering research resulted in strategies that enable producers and policymakers to increase land-based agricultural productivity in an environmentally and financially sustainable manner. Currently, he runs a 25-member research team, funded by federal and provincial bodies as well as industries, grower’s associations, and international organizations. He has authored and co-authored >235 peer-reviewed journal papers (an additional 40+ in review) and 23 book chapters, written and edited 10 books, delivered radio and TV interviews, and granted a patent. He has also delivered several keynote talks, invited talks, and a Plenary talk at globally recognized conferences. He currently teaches multiple undergraduate, graduate, and special courses. Currently, he is an Associate Editor for 9 journals and a guest editor for another 8 journal special issues.

Length (approx): 15 min
 
Using Deep Learning in Yield and Protein Prediction of Winter Wheat Based on Fertilization Prescriptions in Precision Agriculture

Precision Agriculture has been gaining interest due to the significant growth in the fields of engineering and computer science, hence leading to more sophisticated methods and tools to improve agricultural techniques. One approach to Precision Agriculture involves the application of mathematical models and machine learning to fertilization optimization and yield prediction, which is what this research focuses on. Specifically, in this work we report the results of predicting yield and protein content of winter wheat over four farms based on the levels of nitrogen fertilizer applied to the fields. The intent is to use these predictions as a basis for prescribing fertilizer application to optimize net returns on the subsequent harvest. More specifically, we compare methods based on multiple regression (linear and non-linear) and neural networks (shallow and deep). Our results indicate that a deep neural network based on the stacked autoencoder that includes spatial sampling yields the best results.

Amy Peerlinck (speaker)
Bozeman, MT 59715
US

Amy Peerlinck received her MS in computer science from Montana State University, a BA in applied linguistics from the University of Antwerp, and a BS in information science from Karel De Grote College/University. She is currently working towards her PhD in computer science at Montana State University, where she is a research assistant on a Precision Agriculture grant, optimizing profit for farmers through Machine Learning Techniques.

John Sheppard
Norm Asbjornson College of Engineering Dist. Professor
Montana State University
Bozeman, MT 59717
US
John W. Sheppard is the Norm Asbjornson College of Engineering Distinguished Professor of Computer Science in the Gianforte School of Computing, Montana State University, Bozeman, MT. Previously, he spent 20 years in industry at ARINC Inc., Annapolis, MD, where he attained the rank of Fellow. He received the B.S. in computer science from Southern Methodist University, Dallas, TX, and the M.S. and Ph.D. degrees in computer science from The Johns Hopkins University, Baltimore, MD. Dr. Sheppard is a Fellow of the IEEE, and his current research interests include probabilistic graphical models, machine learning, evolutionary algorithms, and algorithms for prognostics & health management.
Bruce Maxwell
Professor of Agroecology
Montana StateUniversity
Bozeman, MT 59717
US

Dr. Bruce Maxwell is Professor of Agroecology/Applied Plant Ecology in the Department of Land Resources and Environmental Science at Montana State University in Bozeman, Montana. Bruce came to Montana State University in 1992 from the University of Minnesota, holds a doctorate degree in Crop Science and Forest Ecology from Oregon State University. He completed his MS degree in 1984 in Agronomy and a BS degree in Botany in 1977 at Montana State University. Following his BS degree he spent 2 year with his wife Anne in the Peace Corps in Micronesia. Maxwell was instrumental in creating the interdisciplinary Sustainable Food and Bioenergy Systems (SFBS) undergraduate degree program. He was co-Principal Investigator of the Montana Research and Economic Development Initiative project on agricultural management optimization under high uncertainty. Maxwell was the MSU Director Montana Institute on Ecosystems and was co- author for the Montana Climate Assessment, report on Climate Change and Human Health and appointed by The Governor to the Montana Climate Solutions Council. Maxwell has received national awards for best researcher, outstanding teaching, best peer reviewed research papers and outstanding graduate student from the Weed Science Society of America. During his career he has published over 100 scientific peer reviewed journal articles and 13 invited book chapters, chaired and been a member of numerous national agricultural and ecological research grant review panels and been a member of two National Academy of Science National Research Council Committees on Agriculture. He was a Fulbright Fellow in Argentina in 2007.

Length (approx): 15 min
 
Precision Agriculture and the Diversity-Stability Hypothesis

The benefit of precision agriculture must be defined both in terms of profitability as well as environmental enhancement.  Maintaining biodiversity within the landscape is central to the protection of ecosystem services.  The diversity-stability hypothesis suggests that there is a positive correlation between increasing diversity and ecosystem stability. In this context, diversity is defined within the context of species richness, strength of community interactions and functional traits.   In this presentation, I will explore the diversity-stability hypothesis and illustrate how precision agriculture can play a pivotal role in identifying opportunities to enhance biodiversity within our agricultural production system.   The fundamental question that drives this research is, “How resistant or resilient are our agroecosystems to stress, such as climate change?"   The transition of yield maps to profitability maps can play a major role in identifying areas within a field that are consistently areas of economic loss.  Identification of these areas allows for the possibility of converting this land base to the protection of ecosystem services via the enhancement of biodiversity.   There is, however, a general perception within the agricultural community that ecological and environmental conservation will equate into a loss of on-farm profitability.  Profitability mapping may allow this perception to transition to an "enhancement in profitability” through ecological and environmental conservation.   In addition, the agricultural industry is being pressured to respond to national and international market demands such as,”How green is your product?  What is the carbon foot print of your production practices?"  Consumer preferences are influenced highly by environmental issues.  How then does a farmer or a country protect his/her "market brand".  Precision agriculture can play an important role in helping to address these issues. Knowledge generated by precision agriculture can be used to connect linkages with ecology and agronomy.   Such linkages will enhance ecosystem stability, on farm profitability and protect access to national and international markets. 

 

Clarence Swanton (speaker)
Professor
University of Guelph
Guelph, Ontario N1G 2W1
CA
Virginia Capmourteres
Madhur Anand
Justin Adams
Length (approx): 15 min